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A pangenome analysis pipeline provides insights into functional gene identification in rice
Pangenome Presence/absence variation Genomic diversity PAV-based GWAS
2023/4/21
A pangenome aims to capture the complete genetic diversity within a species and reduce bias in genetic analysis inherent in using a single reference
genome. However, the current linear format of most...
Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice
GF14f leaf blast resistance bacterial blight resistance SA pathway
2023/4/21
Although it is known that rice 14-3-3 family genes are involved in various defense responses, the functions of OsGF14f in response to diseases have not been reported. Here, we showed that the transcri...
Genome-wide association mapping and gene expression analysis identify OsCPS1 as a new candidate gene controlling early seedling length in rice
rice shoot length genome-wide association study OsCPS1 selection
2023/4/21
High seedling vigor can improve the ability to compete against weeds and flooding at the seedling stage and is essential for the direct seeding of rice. Early shoot length is an important performance ...
Genome-wide association study of pericarp color in rice using different germplasm and phenotyping methods reveals different genetic architectures
rice pericarp color quantitative trait locus candidate gene genome-wide association study
2023/4/21
Pericarp colors (PC) in rice are determined by the types and content of flavonoids in the pericarp. The flavonoid compounds have strong antioxidant activities and are beneficial to human health. Howev...
OsNRAMP2 facilitates Cd efflux from vacuoles and contributes to the difference in grain Cd accumulation between japonica and indica rice
Rice (Oryza sativa L.) Cadmium OsNRAMP2 Haplotype
2023/4/21
Cadmium (Cd) accumulation in rice grain is of health concern. Identifying genes involved in grain Cd accumulation and performing molecular breeding may reduce it. In this study, knockout of OsNRAMP2, ...
The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication
NOG1 cold stress domestication differentially expressed genes RNA-seq
2023/4/21
Rice originated in tropical and subtropical regions and is distributed worldwide. Low temperature is one of the most critical abiotic stresses affecting grain yield and geographical distribution of ri...
Genome-wide analyses of PAM-relaxed Cas9 genome editors reveal substantial off-target effects by ABE8e in rice
AM-relaxed Cas9 nucleases cytosine base editor adenine base editor off-target effect whole-genome sequencing genome editing rice
2023/7/20
PAM-relaxed Cas9 nucleases, cytosine base editors and adenine base editors are promising tools for precise genome editing in plants. However, their genome-wide off-target effects are largely unexplore...
An aspartic protease 47 causes quantitative recessive resistance to rice black-streaked dwarf virus disease and southern rice black-streaked dwarf virus disease
aspartic proteinase quantitative trait loci resistance variety RBSDV SRBSDV
2023/4/21
Rice black-streaked dwarf virus disease (RBSDVD) and southern rice black-streaked dwarf virus disease (SRBSDVD) are the most destructive viral diseases in rice. Progress is limited in breeding due to ...
Genetic and Molecular Factors Determining Grain Weight in Rice
rice grain weight grain size regulatory mechanisms molecular biotechnology
2023/4/21
Grain weight is one of the major factors determining single plant yield production of rice and other cereal crops. Research has begun to reveal the regulatory mechanisms underlying grain weight as wel...
胡泽军（2021）Identification of a New Giant Emrbryo Allele, and Integrated Transcriptomics and Metabolomics Analysis of Giant Embryo Development in Rice（图）
水稻 巨胚发育 图位克隆技术 等位基因 GED
2023/2/27
近日，上海市农业科学院作物育种栽培研究所水稻中心，利用代谢组学和转录组学联合分析技术，对水稻巨胚高营养形成的分子机制展开研究，揭示了能量代谢，氨基酸代谢和脂质代谢是水稻巨胚发育早期成熟阶段的关键代谢通路，该研究有助于推动高营养水稻品种的育种。相关研究成果在线发表于国际学术期刊《Frontiers in Plant Science》(IF:5.753，二区TOP)上。
扬州大学农学院杨泽峰教授课题组和江苏里下河地区农业科学研究所李爱宏课题组及中国农业科学院植物保护研究所宁约瑟课题合作在Genome Biology杂志在线发表题为“Genomic insight into balancing high yield, good quality, and blast resistance of japonica rice”的研究论文（图）
粳稻品种 基因组测序 优良品系 XY99 JXY1
2023/7/20
华中地区是粳米的主要产区之一。然而，该地区仍有数十个高产水稻品种质量低下或易感稻瘟病，严重限制了其在水稻生产中的应用。2021年10月5日，Genome Biology 杂志在线发表了来自扬州大学农学院杨泽峰课题组和江苏里下河地区农业科学研究所李爱宏课题组及中国农业科学院植物保护研究所宁约瑟课题组等合作的题为“Genomic insight into balancing high yield, g...
The Candidate Genes Underlying a Stably Expressed QTL for Low Temperature Germinability in Rice (Oryza sativa L.)
Rice Low temperature germinability Quantitative trait locus Candidate gene Genomewide association study
2023/4/21
Background: Direct seeding is an efficient cultivation technique in rice. However, poor low temperature germinability (LTG) of modern rice cultivars limits its application. Identifying the genes assoc...
近日，由中国水稻研究所主办的《Rice Science》自2016年来连续第5次入选“中国最具国际影响力学术期刊”。
Incorporation of parental phenotypic data into multi-omic models improves prediction of yield-related traits in hybrid rice
parental phenotypic data multi-omic models yield-related traits hybrid rice
2023/7/20
Hybrid breeding has been shown to effectively increase rice productivity. However, identifying desirable hybrids out of numerous potential combinations is a daunting challenge. Genomic selection holds...
Functional divergence of two duplicated Fertilization Independent Endosperm genes in rice with respect to seed development
Fertilization Endosperm genes rice
2023/8/9
Fertilization Independent Endosperm(FIE) is an essential member of Polycomb Repressive Complex 2(PRC2) that plays important roles in the developmental regulation of plants. OsFIE1 and OsFIE2 are two F...