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Variation in demersal fish species richness in the oceans surrounding New Zealand:an analysis using boosted regression trees
Demersal fish Species richness Boosted regression trees Statistical model
2015/8/21
We analysed relationships between demersal fish species richness, environment and trawl characteristics using an extensive collection of trawl data from the oceans around New Zealand. Analyses were ca...
A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis
Canonical correlation analysis DNA copy number Integrative genomic analysis L1 Matrix decomposition Principal component analysis Sparse principal component analysis SVD.
2015/8/21
We present a penalized matrix decomposition (PMD), a new framework for computing a rank-K approximation for a matrix. We approximate the matrix X as X ˆ = k K=1 dkukvk T , where dk, uk, and vk m...
Numerical analysis of a reinforcement learning model with the dynamic aspiration level in the iterated Prisoner's Dilemma
Numerical analysis reinforcement learning model
2011/1/5
Humans and other animals can adapt their social behavior in response to environmental cues including the feedback obtained through experience. Nevertheless, the effects of the experience-based learnin...
An algebraic analysis of the two state Markov model on tripod trees
algebraic analysis Markov model tripod trees
2011/1/5
Methods of phylogenetic inference use more and more complex models to generate trees from data. However, even simple models and their implications are not fully understood. Here, we investigate the tw...
Sensitivity analysis of a computational model of the IKK-NF-κB-IκBα-A20 signal transduction network
Sensitivity analysis computational model IKK-NF-κB-IκBα-A20 signal transduction
2010/11/15
The NF-{\kappa}B signaling network plays an important role in many different compartments of the immune system during immune activation. Using a computational model of the NF-{\kappa}B signaling netw...
General analysis of mathematical models for bone remodeling
General analysis mathematical models remodeling
2010/11/15
Bone remodeling is regulated by pathways controlling the interplay of osteoblasts and osteoclasts. In this work, we apply the method of generalized modelling to systematically analyse a large class o...